Pre-visualization of the normalized count data before any differential analysis
Table of content
List of genes to check: Egr1, Jun, Zfp36l1, Malat1, Dusp1, Nr4a1, Fos
Normalized counts
Z-scores
Remove genes not in list
Normalized counts
Z-score
Genes that could be artefact due to FACS sorting or contamination from other cell types and samples that were potentially contaminated
Filter genes that have a count > 10 in more than 90% of the samples:
Parameters for network construction
Percentages of XY genes per modules
The mean of the Z-score over the samples in the group is plot for each gene